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Full Listing

The full list of publications can be viewed on Google Scholar,  NCBI Bibliography, and PubMed Library.
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Selected Publications

Why and How to Monitor Deployed AI Systems in Health Care
NEJM Catalyst
2026
Uses of generative AI by non-clinician staff at an academic medical center
npj Digital Medicine
2026
A typology of physician input approaches to using AI chatbots for clinical decision-making
npj Digital Medicine
2026
From tool to teammate in a randomized controlled trial of clinician-AI collaborative workflows for diagnosis
npj Digital Medicine
2026
“I Double Checked It with My Own Knowledge:” Physician Perspectives on the Use of AI Chatbots for Clinical Decision-Making
Journal of General Internal Medicine
2026
Artificial intelligence translation in healthcare: an urgent call for evidence-informed policy frameworks
BMJ Health & Care Informatics
2026
Asking the Right Questions: Benchmarking Large Language Models in the Development of Clinical Consultation Templates
Pacific Symposium on Biocomputing
2026
MedFactEval and MedAgentBrief: A Framework and Workflow for Generating and Evaluating Factual Clinical Summaries
Pacific Symposium on Biocomputing
2026
Automated Evaluation of Large Language Model Response Concordance with Human Specialist Responses on Physician-to-Physician eConsult Cases
Pacific Symposium on Biocomputing
2026
MedAgentBench v2: Improving Medical LLM Agent Design
Pacific Symposium on Biocomputing
2026
Uses of generative AI by non-clinician staff at an academic medical center
NPJ Health Systems
2026
Optimizing large language models for detecting symptoms of depression/anxiety in chronic diseases patient communications
NPJ Digital Medicine
2025
Predicting treatment retention in medication for opioid use disorder: a machine learning approach using NLP and LLM-derived clinical features
JAMIA
2025
MedAgentBench: A Virtual EHR Environment to Benchmark Medical LLM Agents
New England Journal of Medicine AI
2025
Monitoring strategies for continuous evaluation of deployed clinical prediction models
Journal of Biomedical Informatics
2025
Affiliation Bias in Peer Review of Abstracts
JAMA
2025
GPT-4 assistance for improvement of physician performance on patient care tasks: a randomized controlled trial
Nature Medicine Journal
2025
Clinical entity augmented retrieval for clinical information extraction
NPJ Digital Medicine
2025
Toward expert-level medical question answering with large language models
Nature Medicine Journal
2025
Large language model uncertainty proxies: discrimination and calibration for medical diagnosis and treatment
Journal of the American Medical Informatics Association
2024
Establishing best practices in large language model research: an application to repeat prompting
Journal of the American Medical Informatics Association
2024
Learning from the EHR to implement AI in healthcare
NPJ Digital Medicine
2024
Recommendations for Clinicians, Technologists, and Healthcare Organizations on the Use of Generative Artificial Intelligence in Medicine
Journal of General Internal Medicine
2024
Large Language Model Influence on Diagnostic Reasoning
JAMA Network Open
2024
Diagnostic reasoning prompts reveal the potential for large language model interpretability in medicine
Nature Digital Medicine
2024
A Data-Driven Algorithm to Recommend Initial Clinical Workup for Outpatient Specialty Referral: Algorithm Development and Validation Using Electronic Health Record Data and Expert Surveys
JMIR Publications
2022
BSAC Vanguard Series: Artificial Intelligence and Antibiotic Stewardship
Journal of Antimicrobial Chemotherapy
2022
Decoding Artificial Intelligence to Achieve Diagnostic Excellence: Learning From Experts, Examples, and Experience
JAMA
2022
Personalized Antibiograms For Machine Learning Driven Antibiotic Selection
Nature Communications Medicine
2022
Analysis of Specialty Nephrology Care Among Patients With Chronic Kidney Disease and High Risk of Disease Progression
JAMA Network Open
2022
Interruptive Electronic Alerts for Choosing Wisely Recommendations: A Cluster Randomized Controlled Trial
Journal of American Medical Informatics Association
2022
Signal from the noise: A mixed graphical and quantitative process mining approach to evaluate care pathways applied to emergency stroke care
Signal from the noise: A mixed graphical and quantitative process mining approach to evaluate care pathways applied to emergency stroke care
2022
Targeting Repetitive Laboratory Testing with ElectronicHealth Records-Embedded Predictive Decision Support: A Pre-Implementation Study
Clinical Biochemistry on Science Direct
2022
Interruptive Electronic Alerts for Choosing Wisely Recommendations: A Cluster Randomized Controlled Trial
Journal of American Medical Informatics Association 2022
2022
Analysis of Specialty Nephrology Care Among Patients With Chronic Kidney Disease and High Risk of Disease Progression
JAMA Network Open (2022)
2022
Decoding Artificial Intelligence to Achieve Diagnostic Excellence: Learning From Experts, Examples, and Experience
JAMA (2022)
2022
BSAC Vanguard Series: Artificial Intelligence and Antibiotic Stewardship
Journal of Antimicrobial Chemotherapy (2022)
2022
Responding To The Opioid Crisis In North America And Beyond: Recommendations Of The Stanford–Lancet Commission
The Lancet (2022)
2022
Personalized Antibiograms For Machine Learning Driven Antibiotic Selection
Nature Communications Medicine, 2022
2022
A Data-Driven Algorithm to Recommend Initial Clinical Workup for Outpatient Specialty Referral: Algorithm Development and Validation Using Electronic Health Record Data and Expert Surveys
JMIR Publications, 2022
2022
Signal from the noise: A mixed graphical and quantitative process mining approach to evaluate care pathways applied to emergency stroke care
Journal of Biomedical Informatics, 2022
2022
Next-Generation Artificial Intelligence for Diagnosis From Predicting Diagnostic Labels to “Wayfinding”
JAMA, 2021
2021
Developing machine learning models to personalize care levels among emergency room patients for hospital admission
JAMIA, 2021
2021
Machine learning for initial insulin estimation in hospitalized patients
JAMIA, 2021
2021
OrderRex clinical user testing: a randomized trial of recommender system decision support on simulated cases
JAMIA, 2020
2020
Planning for the Known Unknown: Machine Learning for Human Healthcare Systems
The American Journal of Bioethics, 2020
2020
Clinical Decision Support and Implications for the Clinician Burnout Crisis
Yearbook of Medical Informatics, 2020
2020
Inpatient Notes: Realizing the Promises of Hospital Electronic Order Sets
Annals of Internal Medicine, 2020
2020
ClinicNet: machine learning for personalized clinical order set recommendations
JAMIA Open, 2020
2020
Research and Reporting Considerations for Observational Studies Using Electronic Health Record Data
Annals of Internal Medicine, 2020
2020
Potential Trade-Offs and Unintended Consequences of AI in Artificial Intelligence in Health Care: The Hope, the Hype, the Promise, the Peril
National Academy of Medicine, 2019
2019
Prevalence and Predictability of Low-Yield Inpatient Laboratory Diagnostic Tests
JAMA Network Open (2019)
2019
A Machine Learning Approach to Predicting the Stability of Inpatient Lab Test Results
AMIA Summits on Translational Science Proceedings (2019)
2019
Neural Networks for Clinical Order Decision Support
AMIA Summits on Translational Science Proceedings (2019)
2019
When order sets do not align with clinician workflow: assessing practice patterns in the electronic health record
BMJ Quality & Safety (2019)
2019
Predicting Low Information Laboratory Diagnostic Tests
AMIA Summits on Translational Science Proceedings (2018)
2018
Impact of Problem-Based Charting on the Utilization and Accuracy of the Electronic Problem List
Journal of the American Medical Informatics Association (2018)
2018
Acetaminophen or Tylenol? A Retrospective Analysis of Medication Digital Communication Practices
Intern Med (2018)
2018
An Evaluation of Clinical Order Patterns Machine-Learned from Clinician Cohorts Stratified by Patient Mortality Outcomes
ournal of Biomedical Informatics (2018)
2018
Decaying Relevance of Clinical Data Towards Future Decisions in Data-Driven Inpatient Clinical Order Sets
International Journal of Medical Informatics (2017)
2017
Machine Learning and Prediction in Medicine – Beyond the Peak of Inflated Expectations
New England Journal of Medicine (2017)
2017
Predicting Inpatient Clinical Order Patterns with Probabilistic Topic Models vs. Conventional Order Sets
JAMIA (2017)
2017
Internal Medicine Resident Computer Usage: An Electronic Audit of an Inpatient Service
JAMA Internal Medicine (2016)
2016
The Patient You Least Want to See [A Piece of My Mind]
JH JAMA (2016)
2016
Distribution of Opioids by Different Types of Medicare Prescribers
JAMA Intern. Med. (2016)
2016
OrderRex: clinical order decision support and outcome predictions by data-mining electronic medical records
Med. Informatics Assoc. (2015)
2015
Decoding Artificial Intelligence to Achieve Diagnostic Excellence: Learning From Experts, Examples, and Experience
JAMA
2022
Decoding Artificial Intelligence to Achieve Diagnostic Excellence: Learning From Experts, Examples, and Experience
JAMA
2022
Decoding Artificial Intelligence to Achieve Diagnostic Excellence: Learning From Experts, Examples, and Experience
JAMA
2022
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HealthRex Lab

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Palo Alto, CA 94304

Email: jonc101@stanford.edu

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